rs31225895 SNP Detail

Summary

• ID
  rs31225895
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:79367850 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTCTGAGAGA AAGGAAACTA
  GGAAGAGGTG CCATCACTTC AGATGGACCG GTATGGGCTG ATCCTTACAG CACACTGCAT
  AGAATATGCT TTGGTAAATT GCTGTAGGTG GTGTGAGGAG GAGAGAACCG GAGGGTTTCA
  GTTTGAGGAA TATATCTTAG TTGTTTCTCT CATAATTCAA TCTCTTTCTA AGACTGTGAA
  Y
  GGCACTTGTC GGAGTCAGAC AGTAGGATAA AGTCCTGTAA CCACGGGAAC AGATCCAGCA
  CTGGGGCATC TGAGGCAGGA TTACAGGATG AGGCTGAGAA GGAAAACCAG TAGAAGTAGC
  TTGCAAATTA ACTGCGAAAG CTCAAGGCCT CCAAAAGGGA AAATACTTTA AAATGGATTA
  CCCAAAAGAA CATATGCCAG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	MSM/Ms	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss47030595	NES10778433	PERLEGEN	MM_PANEL2	f	SNP	C		C	C	C	C	C	T	C	C	C	T		C	C	T	C
ss135372131	ENSMUSSNP3493844	ENSEMBL	ENSEMBL_Sanger	f	SNP		C	C						C				T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	MSM/Ms	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs31225895					SNP	C	C	C	C	C	C	C	T	C	C	C	T	T	C	C	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss47030595	NES10778433	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:79367850 () rs orientation: forward

Symbol	Name	Function Class
Fnip2	folliculin interacting protein 2	within coordinates
Spmip2	sperm microtubule inner protein 2	within coordinates
Tssr33694	transcription start site region 33694	1714 bp upstream