rs31225896 SNP Detail

Summary

• ID
  rs31225896
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:146469338 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CCTGATGATA CTGGATTGAA
  CTTCTGAACC TGTAAGCCAG CCCCAATTAA ATGTTGTCCT TTGTAAGACT TCCCTTGGTC
  ATGGGGTCTG TTCACACCAG TAAAACCCTA AGAAAATAAG CAAACATATT TTTGTTTATT
  AATGAGCCTT TATTGACTAA ACTCAATTAC TCTATGTCAA ATATTATAAG TAAGTAAATA
  W
  ATCTCCACTC TTTGGAATTT GTTGACTATG TAATAAGCAG TCTTTATATT TCTCCTTATT
  CTCTTTATGA CTATAAGAAA TCTCTCTATA TATAAAATCT ATAAATTTTA TATTTTATAA
  TTTTTCCCAT ATAGGCCAGT CTTGTTTTAT ATATTTTTGA GAACTCTCTC TCTATATATA
  TATAAAATGT ATAAATTTTA                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	CAST/EiJ	DBA/2J	FVB/NJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ
ss47030596	NES10852966	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	A	T	T	A	T	T	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	CAST/EiJ	DBA/2J	FVB/NJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ
rs31225896					SNP	T	T	T	T	A	T	T	A	T	T	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss47030596	NES10852966	PERLEGEN	MM_PANEL	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:146469338 () rs orientation: forward

Symbol	Name	Function Class
Gm40170	predicted gene, 40170	within coordinates
Prkacb	protein kinase, cAMP dependent, catalytic, beta	Intron
Rr587078	regulatory region 587078	1983 bp distal
Rr587079	regulatory region 587079	194 bp distal
Rr587080	regulatory region 587080	1171 bp proximal