rs31225900 SNP Detail

Summary

• ID
  rs31225900
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:146469404 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GACTTCCCTT GGTCATGGGG
  TCTGTTCACA CCAGTAAAAC CCTAAGAAAA TAAGCAAACA TATTTTTGTT TATTAATGAG
  CCTTTATTGA CTAAACTCAA TTACTCTATG TCAAATATTA TAAGTAAGTA AATATATCTC
  CACTCTTTGG AATTTGTTGA CTATGTAATA AGCAGTCTTT ATATTTCTCC TTATTCTCTT
  W
  ATGACTATAA GAAATCTCTC TATATATAAA ATCTATAAAT TTTATATTTT ATAATTTTTC
  CCATATAGGC CAGTCTTGTT TTATATATTT TTGAGAACTC TCTCTCTATA TATATATAAA
  ATGTATAAAT TTTATATTTT ATAATTTCTC CTAAATAAGC CAGTTGTGTT TTGTGCATTT
  TGAGACTCGG AGGCACACAT                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	BALB/cByJ	CAST/EiJ	DBA/2J	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ
ss47030600	NES10852973	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	A	T	T	T	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	BALB/cByJ	CAST/EiJ	DBA/2J	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ
rs31225900					SNP	T	T	T	A	T	T	T	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss47030600	NES10852973	PERLEGEN	MM_PANEL	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:146469404 () rs orientation: forward

Symbol	Name	Function Class
Gm40170	predicted gene, 40170	within coordinates
Prkacb	protein kinase, cAMP dependent, catalytic, beta	Intron
Rr587079	regulatory region 587079	260 bp distal
Rr587080	regulatory region 587080	1105 bp proximal