rs31226431 SNP Detail

Summary

• ID
  rs31226431
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:86172148 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTTGTGTGCT GAGCAGCATG
  CCAGAGCAGA GGCAGACAGG CACATAATCA ATTCTTAAGA TTTTAAGTTA AAAAGGACAG
  TGTGCCCACA TCTTGGCAGC AGGTTTGCAG ATGCCTACAT CATGGTTGTT GAGATAACAA
  AGGCCAGCAA AGGCTAAAGG TGAGCGTGTC TTAGGTCCTG TCTTGGCAGT TTCCTGAGAT
  K
  TATCTTTGTA CACATAACAA CTTGTCCAAG ATCCAAGTGA CTTTGGGGAG TGGGAGCTGT
  AGCTATGGAA TATTCCATTG CAGGACAAGG ATTCAGATAT GTGGCTGGAA GTAGGCCCAA
  GAGCAAAATA CTGCTGTCTC TCTTAGCCCT ATGGAAAGAT AGTCTTAGGA TCAGAGTAGG
  GTTTCATGTG GGCACATGTG                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
ss45511007	mCV24949238	ABI	CRAMUS_MOUSE	f	SNP	G	G	G	T	G
ss135445645	ENSMUSSNP4747607	ENSEMBL	ENSEMBL_Sanger	f	SNP		G	G		G
ss320829442	CHEV_3_86068763	CHEVERUD	SCREENING_POP	f	SNP						G	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
rs31226431					SNP	G	G	G	T	G	G	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:86172148 () rs orientation: forward

Symbol	Name	Function Class
Btf3-ps12	basic transcription factor 3, pseudogene 12	1266 bp upstream
Lrba	LPS-responsive beige-like anchor	within coordinates
Tssr29784	transcription start site region 29784	1384 bp downstream