rs31227468 SNP Detail

Summary

• ID
  rs31227468
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  125
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr14:61295051 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                                                   
  GATGATGCAT TCGGAGCTCT TCACACAGGG TTGTGGGAAC TAGAAGTCCT TTGAACACCG
  CAGGGCTTCC GCAATCATCA TTATCACCCA GATAAGACTT CTCATTTTGA TAAGTGTTCC
  ACTGGTCGGT TTATCATTTC CTAGCTATCA ACACTCACTT TGATTCTGTT TGTACAAACA
  CTGGGTGAGC AGATACTGGG AATTATGTTC TTTCAAGTTT TGATTTAATA ACATATCATT
  ATGGGCTGAA GAGGAGGCTC AGTAAAGGGC TTGCTGTGTG AATGTGAGGC TAGGACTTCA
  R
  AACTGGCCTA AGTGGCTTAG AAGGTGGAGG TGGGGGAGTC TCTGCAGCAG GCTGGTTTGC
  CAGACTAGCT GTGCAGGGTG GACTTTAGCT GTAATTGGTT ATTCCAGTTG GACAAAGCAA
  CAAAAAGATG AAGCCTATGT TCTGTCACTA TGACACAGTA AGTAGGTCGC AGTACTGATG
  AAGAACAGAA GTGAATTCGG CTGAGTTATA TCTAAAAGCA CTGCCTCTGC CCGGCTCGCA
  CAAGGGCTTC CTAGCAGATG ATGTCACAAT TCTAGAGGAG GTCACAGGCA AAACAGGGAA
                                                                   
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	C57BL/6J
ss39267324	mCV24378449	ABI	CRAMUS_MOUSE	f	SNP	G	G	A
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	C57BL/6J
rs31227468					SNP	G	G	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr14:61295051 () rs orientation: forward

Symbol	Name	Function Class
Cpgi6575	CpG island 6575	837 bp distal
Gm41168	predicted gene, 41168	1419 bp upstream
Rr369842	regulatory region 369842	790 bp downstream