rs31227754 SNP Detail

Summary

• ID
  rs31227754
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:146472127 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CAGCACCCAC ATGGAGGTTC
  ACAAGCATCT GAAGCTCCAT TTCCTGAGGG AGATCTGATG TCTGGTCGCT GTAGTCACAT
  ACATGCAAGC AGGCAAAACA CTCAGACTCA TTAACAACAA CAAAGAAATG TGCAAGTGTC
  TAGGATCACA AGGAACTTGC TGGTATTGGT GCCAGCACAG CAAGGGAGAG CCCTGTTGTA
  Y
  CCAGAAAACA AAGGCCATCC TTTCAATTTG CCATGACCTA ATGAATTCCT GGCTGTCCCA
  ACAGGGCTAG GAGGAGCACA GAAGCAACAG GCAGTGTTGT CCTGCACTCA TTTCCTCACA
  AGCTTCATCC CAGGAAATCA GTGAGGATGA AATGGTTGCT TCTCTTACTG GAAGGCAAGT
  AATCCAGAGC ACAATCCGCT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss47030616	NES10852795	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	C	T	T	T	C	T	T	C	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs31227754					SNP	T	T	T	T	T	T	C	T	T	T	C	T	T	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss47030616	NES10852795	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:146472127 () rs orientation: forward

Symbol	Name	Function Class
Gm40170	predicted gene, 40170	within coordinates
Prkacb	protein kinase, cAMP dependent, catalytic, beta	Intron
Rr375878	regulatory region 375878	1880 bp upstream
Rr587080	regulatory region 587080	941 bp distal
Rr587081	regulatory region 587081	within coordinates