rs31228308 SNP Detail

Summary

• ID
  rs31228308
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr7:99770672 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        GCCCC GCGCTCAACC CGCCCCAGCC
  K
  TAGCTCCCGC CGGCGGGAAA CAGCT                                      
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	C57BL/6J	DBA/2J
ss46010199	mCV23563840	ABI	CRAMUS_MOUSE	f	SNP	G	G		G	T
ss145524289	ENSMUSSNP2419462	ENSEMBL	ENSEMBL_Sanger	f	SNP			G		T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	C57BL/6J	DBA/2J
rs31228308					SNP	G	G	G	G	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:99770672 () rs orientation: forward

Symbol	Name	Function Class
Cpgi19477	CpG island 19477	within coordinates
Pold3	polymerase (DNA-directed), delta 3, accessory subunit	within coordinates
Rr400466	regulatory region 400466	within coordinates
Rr652064	regulatory region 652064	10 bp distal
Rr652065	regulatory region 652065	within coordinates
Tssr73730	transcription start site region 73730	916 bp upstream
Tssr73731	transcription start site region 73731	371 bp upstream
Tssr73732	transcription start site region 73732	23 bp upstream
Tssr73733	transcription start site region 73733	within coordinates
Tssr73734	transcription start site region 73734	47 bp downstream