rs31228769 SNP Detail

Summary

• ID
  rs31228769
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr7:118453682 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        CCAGA CTTGAGCCAT ATCAAGTCCA
  Y
  TCTCACCTTG CTTTAGGCGC ACACC                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J
ss46010402	mCV23653553	ABI	CRAMUS_MOUSE	f	SNP	C	T
ss145794207	ENSMUSSNP1112466	ENSEMBL	ENSEMBL_Sanger	f	SNP		T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J
rs31228769					SNP	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:118453682 () rs orientation: forward

Symbol	Name	Function Class
Cpgi19628	CpG island 19628	650 bp proximal
Iqck	IQ motif containing K	1293 bp upstream
Knop1	lysine rich nucleolar protein 1	within coordinates
Rr654563	regulatory region 654563	604 bp proximal
Rr654564	regulatory region 654564	1144 bp proximal
Rr654565	regulatory region 654565	1505 bp proximal
Tssr68731	transcription start site region 68731	1276 bp upstream
Tssr74457	transcription start site region 74457	1190 bp downstream
Tssr74458	transcription start site region 74458	1492 bp downstream
Tssr74459	transcription start site region 74459	1515 bp downstream
Tssr74460	transcription start site region 74460	1525 bp downstream
Tssr74461	transcription start site region 74461	1558 bp downstream
Tssr74462	transcription start site region 74462	1574 bp downstream
Tssr74463	transcription start site region 74463	1902 bp downstream