rs31229879 SNP Detail

Summary

• ID
  rs31229879
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr7:44398571 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CCCGGTCCAG TCTCTGCTAC
  TTAGGGAAGT GTTAGTCCCA CACCTGTGGA ATTTAGCCTT TGGTACTCTG CTGTGCTGCG
  TTCCTGCAAC AGGAGCATAG ATGGTAGCAA GCTGATGGTC ATACGTAGGA TAAATGAACT
  AAACAAATGG GTGCATAATA AAAGCCGACT TGAGTATCAG TAGTCGGAAC TGAATGTGCA
  R
  CCTTAGACAG GAGACCTCAA CACTCAAGAT CCGAGCACTT ACTGTATGCA AGGATCTGTG
  CAACAGACAC TTATTGTATT ATATACCCGA ACTGCCACCT CCCCTAGGAG TAGCTCTAAA
  CTCAGCAATG TTCTAGCACT TGGGAGGCTG AGTCAGGAGG ATTTTTGAGA ATAGTGAATT
  CCAGGACAGC CCAGGATGGA                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BTBR T<+> Itpr3/J	C57BL/6J	CAST/EiJ	DBA/2J	KK/HlJ	MOLF/EiJ	MSM/Ms	NZW/LacJ	WSB/EiJ
ss46010702	mCV27580304	ABI	CRAMUS_MOUSE	f	SNP	G	A	G			G		G
ss51890940	NES14914130	PERLEGEN	MM_PANEL2	f	SNP			G	G	G		G		G	A		A	G
ss149120987	ENSMUSSNP1581289	ENSEMBL	ENSEMBL_Sanger	f	SNP		A						G			A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BTBR T<+> Itpr3/J	C57BL/6J	CAST/EiJ	DBA/2J	KK/HlJ	MOLF/EiJ	MSM/Ms	NZW/LacJ	WSB/EiJ
rs31229879					SNP	G	A	G	G	G	G	G	G	G	A	A	A	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51890940	NES14914130	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:44398571 () rs orientation: forward

Symbol	Name	Function Class
Cpgi18993	CpG island 18993	101 bp distal
Rr400296	regulatory region 400296	551 bp downstream
Tssr66420	transcription start site region 66420	587 bp downstream
Tssr66421	transcription start site region 66421	513 bp downstream
Tssr66422	transcription start site region 66422	496 bp downstream
Tssr66423	transcription start site region 66423	219 bp downstream
Tssr66424	transcription start site region 66424	150 bp downstream
Vrk3	vaccinia related kinase 3	within coordinates
Zfp473	zinc finger protein 473	530 bp upstream