rs31229886 SNP Detail

Summary

• ID
  rs31229886
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr1:151851799 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                    GAAGTGAGT CCCTCCAAGT TCAGACACTC
  CCATTCCCAA TGACTCGCCC AAGTCAAAGG CATCCTTCAA CTCTAAGGAC AAGACAGAAA
  TCAAAAGTTA GTGCTGTGCA TCATTTGAGA GAAAAGAAAA TCTCCTCATT TATACAAAGG
  Y
  ATCTTGAAAG GGTGAATCAA GATCAGTGCA ACACTTGTCA ATCTTGGGAG CTCATGCTCC
  AACCGAGCAC AAGAAGCAGA CCGGAGTGGC GCGACTGAAC AGCTCTCGCG GGAGGACGGC
  CTCTACATGG TGAGTGTTAA TTAAGGAAAA                                 
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss45170929	mCV24640111	ABI	CRAMUS_MOUSE	f	SNP		C					C		T
ss49716703	NES13076200	PERLEGEN	MM_PANEL2	f	SNP	C	C	T	C	T	C		T	T	C	T		T	C	T	T		C
ss145725045	ENSMUSSNP134500	ENSEMBL	ENSEMBL_Sanger	f	SNP		C							T
ss320061202	CHEV_1_153823178	CHEVERUD	SCREENING_POP	f	SNP												C					T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs31229886					SNP	C	C	T	C	T	C	C	T	T	C	T	C	T	C	T	T	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss49716703	NES13076200	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:151851799 () rs orientation: forward

Symbol	Name	Function Class
1700025G04Rik	RIKEN cDNA 1700025G04 gene	Intron
Rr420390	regulatory region 420390	759 bp distal
Rr420391	regulatory region 420391	174 bp distal
Rr420392	regulatory region 420392	1470 bp proximal