rs31229888 SNP Detail

Summary

• ID
  rs31229888
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr1:151851680 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        TAAAGGACCA AGCGTGTCCT CTTTTGCTTT GTTGTGGGAA
  CTTTTCAGTG TCTAAAGGTC CCTAAGCCAG GAAGTGAGTC CCTCCAAGTT CAGACACTCC
  Y
  ATTCCCAATG ACTCGCCCAA GTCAAAGGCA TCCTTCAACT CTAAGGACAA GACAGAAATC
  AAAAGTTAGT GCTGTGCATC ATTTGAGAGA AAAGAAAAT                       
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss45157658	mCV24640120	ABI	CRAMUS_MOUSE	f	SNP		C					C		T
ss49716705	NES13076198	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C		C	T	C	C	C	C	C	C	C
ss145725033	ENSMUSSNP489684	ENSEMBL	ENSEMBL_Sanger	f	SNP		C							T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs31229888					SNP	C	C	C	C	C	C	C	C	T	C	C	C	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss49716705	NES13076198	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:151851680 () rs orientation: forward

Symbol	Name	Function Class
1700025G04Rik	RIKEN cDNA 1700025G04 gene	Intron
Rr420390	regulatory region 420390	640 bp distal
Rr420391	regulatory region 420391	55 bp distal
Rr420392	regulatory region 420392	1589 bp proximal