rs31229889 SNP Detail

Summary

• ID
  rs31229889
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr1:151850794 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                    CAGTAACAG CAACAGATCC AGGTGACTGT
  TTAATTTAAT TAGGCGTGGC AGGGATGGCT GGAACTCTGT GCTGGACTGT ACGGTACAGA
  ACACCTGTGA GTCCTGTTTT CATCCCATAA CATGCTGTTC CCAAATCGGG AGCCAGGCTT
  Y
  TGCTAATCAC AGGGACACTC AGAAGGCTGA GTCAACAGCT CCCTCCCCCT CAGAGATTAA
  GCTACTTTTG TTCTACTTGA AAACAAATTA GCACAGTGCC AGAATAGTCT GTGGGACCTT
  GAATGTGCCC CGCTCAAGTG ACACAAAAGT                                 
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss49716706	NES13076286	PERLEGEN	MM_PANEL2	f	SNP	C	C	T	C	T	C	T	C	C	T		T	C	T	T		C
ss320061190	CHEV_1_153822173	CHEVERUD	SCREENING_POP	f	SNP											C					T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs31229889					SNP	C	C	T	C	T	C	T	C	C	T	C	T	C	T	T	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss49716706	NES13076286	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:151850794 () rs orientation: forward

Symbol	Name	Function Class
1700025G04Rik	RIKEN cDNA 1700025G04 gene	Intron
Rr420390	regulatory region 420390	within coordinates
Rr420391	regulatory region 420391	374 bp proximal