rs31230279 SNP Detail

Summary

• ID
  rs31230279
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr6:99856368 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AAGCTTGGGT CAGTGAATAG
  CTTCCTCTCC AAACCCGGGA GAGCACGTAC CTTTGTCCTT TCAAGCCCTG CAGTTTGCAC
  AGCTTGCTAG ACCAGGCTTA TGACTGATAT AGACAGATGA TGGCAAAAAT ATCAATTAAA
  CGAAAGCCTG ACTCTGAAGC ACATAGCCCA GGAAGCCATC CTGCCACCTG CTAACTAGTT
  M
  TGGAGGTGAG GCTCCAGTCT GCAGCAGGCA ACCCAAGAAA CCCAGCATCT TCTCTTACTA
  CGGGCTTTGG AACTGAGAGC CCCTCCATAC CTTTCCTACT TTTCCTATCC ACTTCTAGAA
  TAGTCCAGCT ACAGAAAGCC AGAGGTGCCC TACAACCCAG TCATGCAGGA TACCCAAAGC
  GTCCCGCTGC AGTTTTCCCA                                            
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss48030429	NES11885810	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	A	C	C	C	C	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs31230279					SNP	C	C	C	C	A	C	C	C	C	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss48030429	NES11885810	PERLEGEN	MM_PANEL	f	SNP	A/C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:99856368 () rs orientation: forward

Symbol	Name	Function Class
Gm44442	predicted gene, 44442	within coordinates
Tpt1-ps3	tumor protein, translationally-controlled, pseudogene 3	1073 bp upstream
Tssr57987	transcription start site region 57987	1786 bp downstream
Tssr57988	transcription start site region 57988	1428 bp downstream
Tssr62340	transcription start site region 62340	974 bp upstream