rs31230403 SNP Detail

Summary

• ID
  rs31230403
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr14:70703399 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TCCTGGCAGA GGACCCTGCT
  GGCAAGGCAG GATCACATAA TATGTTCTGG GTGTGACCCT GCCTTCTGGG ACAGTTCCTT
  TGCCGGGGTC TGTCACACAC TGTTAGTTAT CTCTCCATTA CAGGACCCAG GAGCACAGAG
  GAGTGGGGCA GGGAGCAAAA TGAAAAACTC TTGAGCATGG AAGGCTCTGA GGGAATCTCA
  R
  TTTTTTAGCT TCCAAGTTGA GTACAGAGGA GTCCAATGTT CCAAAAACCC ATCTGGGACA
  AATCTTTTAG GATACGGATG AGAATCAGGT ATGAGGAAGC CAAAGGACAG GGCTTGGAGG
  GTCCCACACA CATGGCCCAA CCAGAGTAGC CTCAGTCTTA TTTGCCCACA CGTATATGGT
  TTCCTTGGGA GGAGAGAAAG                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss39267502	mCV24332330	ABI	CRAMUS_MOUSE	f	SNP		A	G					G		G
ss51530308	NES14627563	PERLEGEN	MM_PANEL2	f	SNP	A		G	G	G	G	G		G	G	G	A	G	G	G	G	G
ss139684670	ENSMUSSNP3710418	ENSEMBL	ENSEMBL_Sanger	f	SNP		A								G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs31230403					SNP	A	A	G	G	G	G	G	G	G	G	G	A	G	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51530308	NES14627563	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr14:70703399 () rs orientation: forward

Symbol	Name	Function Class
Cpgi6694	CpG island 6694	907 bp proximal
Phyhip	phytanoyl-CoA hydroxylase interacting protein	within coordinates
Rr290302	regulatory region 290302	1202 bp proximal
Tssr4470	transcription start site region 4470	651 bp upstream
Tssr126423	transcription start site region 126423	496 bp upstream
Tssr126424	transcription start site region 126424	580 bp upstream
Tssr126425	transcription start site region 126425	607 bp upstream
Tssr126426	transcription start site region 126426	764 bp upstream
Tssr126427	transcription start site region 126427	861 bp upstream
Tssr126428	transcription start site region 126428	894 bp upstream
Tssr126429	transcription start site region 126429	1653 bp upstream
Tssr126430	transcription start site region 126430	1722 bp upstream
Tssr126431	transcription start site region 126431	1876 bp upstream
Tssr126432	transcription start site region 126432	1910 bp upstream