rs31230666 SNP Detail

Summary

• ID
  rs31230666
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr7:5083077 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        GGCTT CAAGGCTTGG ACCTTTACGC
  S
  TCTCCACTGC TGCGTAGATG CGGAA                                      
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
ss46010709	mCV22918334	ABI	CRAMUS_MOUSE	f	SNP	C	C	G	C
ss148184624	ENSMUSSNP3348656	ENSEMBL	ENSEMBL_Sanger	f	SNP	C	C		C
ss322095914	CHEV_7_5031680	CHEVERUD	SCREENING_POP	f	SNP					C	C
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
rs31230666					SNP	C	C	G	C	C	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:5083077 () rs orientation: forward

Symbol	Name	Function Class
Cpgi18280	CpG island 18280	within coordinates
Epn1	epsin 1	157 bp upstream
Rr167875	regulatory region 167875	within coordinates
Tssr64418	transcription start site region 64418	704 bp downstream
Tssr64419	transcription start site region 64419	581 bp downstream
Tssr64420	transcription start site region 64420	136 bp upstream
Tssr64421	transcription start site region 64421	248 bp upstream
Tssr64422	transcription start site region 64422	1844 bp upstream
U2af2	U2 small nuclear ribonucleoprotein auxiliary factor (U2AF) 2	140 bp downstream