rs31230730 SNP Detail

Summary

• ID
  rs31230730
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:79424108 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GCCTACATCA GGATTACCAA
  GTTATCCCTG CTCAGGTCTG CTGGCTCCAG TTCCCTAGGA AGTCACTTCC CCCTCTATCT
  CTGCCACCGG CAGCCACTCC ATGGAGGGAG AGTGCTCAGC TAAGCCATCT GTCAGAAGCA
  TTTGGAGGGA GCCATCTCCT TCCTGTCCAA AGAATCAACT GCTGGCTCAC CTAAGCCTCG
  M
  ATCCCAGTCT ACCATTAAAG CAACCGTGAA TCACCTGCCC GTCCTCGGCT TTCTCTGCTG
  CCCACCTAAT ACGCCCAGTC ACTAGTGTGA CAACTGGCTG GCTGAGAGAA TTCTGTAAGT
  ACAGTGCTAT CACCCCGCTT GACTGCCTTC AACCTAACAT TTCCTTCCTG CAAACAGAGG
  TTCTTATCAG AATCTGGAAA                                            
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss47031230	NES10776462	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	A	A	A	A	C	A	A	C	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs31230730					SNP	A	A	A	A	A	A	A	A	A	C	A	A	C	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss47031230	NES10776462	PERLEGEN	MM_PANEL	f	SNP	A/C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:79424108 () rs orientation: forward

Symbol	Name	Function Class
Fnip2	folliculin interacting protein 2	within coordinates
Rr77764	regulatory region 77764	307 bp distal
Tssr33701	transcription start site region 33701	456 bp upstream