rs31231554 SNP Detail

Summary

• ID
  rs31231554
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:79424209 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TGGAGGGAGA GTGCTCAGCT
  AAGCCATCTG TCAGAAGCAT TTGGAGGGAG CCATCTCCTT CCTGTCCAAA GAATCAACTG
  CTGGCTCACC TAAGCCTCGA ATCCCAGTCT ACCATTAAAG CAACCGTGAA TCACCTGCCC
  GTCCTCGGCT TTCTCTGCTG CCCACCTAAT ACGCCCAGTC ACTAGTGTGA CAACTGGCTG
  K
  CTGAGAGAAT TCTGTAAGTA CAGTGCTATC ACCCCGCTTG ACTGCCTTCA ACCTAACATT
  TCCTTCCTGC AAACAGAGGT TCTTATCAGA ATCTGGAAAA CAAGGACCAG TGAGATGGCT
  CAGCAGGTAA AGTACCTGTC CCACAACTGG GTTTGATCCC TGGACTCACA GGTGGAAGGA
  GAGACCAGCG TCACAAAGTT                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss47031234	NES10776464	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	G	G	G	T	G	G	T	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs31231554					SNP	G	G	G	G	G	G	G	G	G	T	G	G	T	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss47031234	NES10776464	PERLEGEN	MM_PANEL	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:79424209 () rs orientation: forward

Symbol	Name	Function Class
Fnip2	folliculin interacting protein 2	within coordinates
Rr77764	regulatory region 77764	408 bp distal
Tssr33701	transcription start site region 33701	557 bp upstream