rs31232693 SNP Detail

Summary

• ID
  rs31232693
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr6:99853479 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GGAAGCAGCG CTGTTTATTG
  CCGTGGGAAC CCTTGCATCC ATCTCCTCAG GATTCTCAGC ATCCTGTATT GACAATAATC
  AGGTGGGACA CATTGTTGCC ATTTCTAATA AACGCCTCTG TGAGAGACAT TGAAGAAATA
  ACCTCTTCCC ACTGGGGCCC TCCTGCATCC TTAGCCTTGA CTGTTCCTCC CAATTCCTCC
  Y
  ACACAGTACC TTCCCAGATA ACTGCTCCCC TCCTTGGTAT TAATAAAACC CATAAATCAA
  CATAATGGCT GCAAAACCTT TTGAGAAAGT CTTTTCCTTC TGAGAACTAC CCCTGTCTGA
  CTGTCCTGGA AACATAAACT TGGTCTGATT AATCCTGCCA AAGGCCACAG GAACACTGAG
  CACACCTCTC TGGCTCCTTG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss48030399	NES11885874	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	T	C	C	C	T	C	T	T	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs31232693					SNP	C	C	C	C	C	T	C	C	C	T	C	T	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss48030399	NES11885874	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:99853479 () rs orientation: forward

Symbol	Name	Function Class
Gm44442	predicted gene, 44442	within coordinates
Tpt1-ps3	tumor protein, translationally-controlled, pseudogene 3	1298 bp downstream
Tssr57987	transcription start site region 57987	1089 bp upstream
Tssr57988	transcription start site region 57988	1442 bp upstream
Tssr62340	transcription start site region 62340	1913 bp downstream