rs31233259 SNP Detail

Summary

• ID
  rs31233259
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  125
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:69026673 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                                                   
  TGCCACTCCA ATCCCAGGGG ATCCAACTCC CTCTTCCGGC TTTCAGCAGC ACCAAGCATA
  CACAGTGCAC AGACATACAT GGAGAAGAAG CACTCATACT TTTTGATGCC AGGTATGGGA
  TCTTTAATTT CAGCACTTGG GCGGTGAGGC CAGACTGATC TACATAGTGA ATTCTAGGCC
  AGGGAGGGCT ACTTGACAGG TTACAAGCCA GCAAAGGCTA CACAGTGAGA CCTTGCCTTA
  ATACATACAT ACATACATAC ATACATACAT ACATACATAC ATACACACAC ACACACACAT
  R
  CAAACACATG CAAACACACA CATACACACA GAGAACATTT ATCAACCATT CCTGCAGCAA
  TATCTATAAT CATATGTAGA AAAAAAAAAG TACTTGGACA ATTAGGTTGT GAATTGAACT
  ATTTTTTTTT TCCCCAAGAA AGAGCATTTT CACTTGAAAG AATGACAGAG AAATTATGGT
  TATTTTGATT TAGTGTCTGG CAGATTTAGT AAGTCTATGG CTTAAAGGAA AACAATCTAT
  AGTATTTACT GCTAATGATT AAAATGTGGG TTTTCAAGTA AAGATTAGTT TTAGAAAACT
                                                                   
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J
ss45511737	mCV24616077	ABI	CRAMUS_MOUSE	f	SNP	A	G	A	G
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J
rs31233259					SNP	A	G	A	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:69026673 () rs orientation: forward

Symbol	Name	Function Class
Gm37558	predicted gene, 37558	402 bp downstream
Kpna4	karyopherin subunit alpha 4	Intron
Rr578128	regulatory region 578128	91 bp distal