rs31233557 SNP Detail

Summary

• ID
  rs31233557
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr6:99853659 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTGTTCCTCC CAATTCCTCC
  CACACAGTAC CTTCCCAGAT AACTGCTCCC CTCCTTGGTA TTAATAAAAC CCATAAATCA
  ACATAATGGC TGCAAAACCT TTTGAGAAAG TCTTTTCCTT CTGAGAACTA CCCCTGTCTG
  ACTGTCCTGG AAACATAAAC TTGGTCTGAT TAATCCTGCC AAAGGCCACA GGAACACTGA
  R
  CACACCTCTC TGGCTCCTTG GCAAGCCCAG CACTATAGAT TGAACGGCAT TGCCACCTCA
  GCATGAGTGA CACCTTTGCG CAAGCTGCAT AGGTGAAGTT CTTCATCCGG TCAACCTACA
  ACCTCCTATC TACTCCAGGA CAGCTCAAGA CCTTTTGCAA AGCCAAGCAC AGTAGTGCAC
  TCCTTTAATC TCAGCACTCA                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss48030403	NES11885877	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	G	G	A	G	A	A	G
SNP Consensus Information
SNP					Consensus Type	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs31233557					SNP	G	G	G	G	G	G	G	G	A	G	A	A	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss48030403	NES11885877	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:99853659 () rs orientation: forward

Symbol	Name	Function Class
Gm44442	predicted gene, 44442	within coordinates
Tpt1-ps3	tumor protein, translationally-controlled, pseudogene 3	1118 bp downstream
Tssr57987	transcription start site region 57987	909 bp upstream
Tssr57988	transcription start site region 57988	1262 bp upstream
Tssr62340	transcription start site region 62340	1733 bp downstream