rs31233559 SNP Detail

Summary

• ID
  rs31233559
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr6:99853705 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TCCCCTCCTT GGTATTAATA
  AAACCCATAA ATCAACATAA TGGCTGCAAA ACCTTTTGAG AAAGTCTTTT CCTTCTGAGA
  ACTACCCCTG TCTGACTGTC CTGGAAACAT AAACTTGGTC TGATTAATCC TGCCAAAGGC
  CACAGGAACA CTGAGCACAC CTCTCTGGCT CCTTGGCAAG CCCAGCACTA TAGATTGAAC
  K
  GCATTGCCAC CTCAGCATGA GTGACACCTT TGCGCAAGCT GCATAGGTGA AGTTCTTCAT
  CCGGTCAACC TACAACCTCC TATCTACTCC AGGACAGCTC AAGACCTTTT GCAAAGCCAA
  GCACAGTAGT GCACTCCTTT AATCTCAGCA CTCAGGAAGC AGGAGACAGA ACTCTATGAG
  TTCTACGTCA GCCAGCCTAG                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss48030405	NES11885879	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	T	G	G	G	T	G	T	T	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs31233559					SNP	G	G	G	G	G	T	G	G	G	T	G	T	T	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss48030405	NES11885879	PERLEGEN	MM_PANEL	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:99853705 () rs orientation: forward

Symbol	Name	Function Class
Gm44442	predicted gene, 44442	within coordinates
Tpt1-ps3	tumor protein, translationally-controlled, pseudogene 3	1072 bp downstream
Tssr57987	transcription start site region 57987	863 bp upstream
Tssr57988	transcription start site region 57988	1216 bp upstream
Tssr62340	transcription start site region 62340	1687 bp downstream