rs31233979 SNP Detail

Summary

• ID
  rs31233979
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:51183210 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        AATTT AGAGATAAAC ATAATTTTTC
  Y
  TCCAAACCGA ACTGCTTTGT CCACC                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
ss45512392	mCV23391942	ABI	CRAMUS_MOUSE	f	SNP	T	C	C
ss135172558	ENSMUSSNP3414299	ENSEMBL	ENSEMBL_Sanger	f	SNP	T	C	C
ss320762237	CHEV_3_51079711	CHEVERUD	SCREENING_POP	f	SNP				C	T
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
rs31233979					SNP	T	C	C	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:51183210 () rs orientation: forward

Symbol	Name	Function Class
4930577N17Rik	RIKEN cDNA 4930577N17 gene	970 bp upstream
Cpgi13132	CpG island 13132	88 bp proximal
Elf2	E74-like factor 2	within coordinates
Gm64767	predicted gene, 64767	475 bp upstream
Rr397655	regulatory region 397655	254 bp upstream
Rr576259	regulatory region 576259	within coordinates
Rr576260	regulatory region 576260	486 bp proximal
Rr576261	regulatory region 576261	1569 bp proximal
Rr576262	regulatory region 576262	1680 bp proximal
Tssr29048	transcription start site region 29048	468 bp upstream
Tssr29049	transcription start site region 29049	1058 bp upstream
Tssr33194	transcription start site region 33194	237 bp downstream
Tssr33195	transcription start site region 33195	1488 bp downstream
Tssr33196	transcription start site region 33196	1522 bp downstream
Tssr33197	transcription start site region 33197	1681 bp downstream