rs31234745 SNP Detail

Summary

• ID
  rs31234745
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  125
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:79440127 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        ATCTTTATAA ATTACCCACT AATTTAAGGT AAGGAAAACT
  AGGGATGCCA GGCCCAGACC TCAGTTGATT TAAGACATTT TACATGCCGT ACATTGGACC
  R
  GAACCCGCCA CCCTCCATGA ACTTAAAAAA AAAAAAAAAA AAAAAAAAAA AAAAAAGACT
  TCCCAAGTTT CAGATTGCAA CACACCTATG ACAATGAATT                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss47031428	NES10775819	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	A	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs31234745					SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	A	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss47031428	NES10775819	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:79440127 () rs orientation: forward

Symbol	Name	Function Class
Fnip2	folliculin interacting protein 2	within coordinates
Rr2009	regulatory region 2009	47 bp distal
Rr375221	regulatory region 375221	within coordinates
Rr578538	regulatory region 578538	429 bp distal
Tssr29583	transcription start site region 29583	797 bp downstream
Tssr33705	transcription start site region 33705	1150 bp upstream
Tssr33706	transcription start site region 33706	1132 bp upstream
Tssr33707	transcription start site region 33707	1114 bp upstream
Tssr33708	transcription start site region 33708	1092 bp upstream
Tssr33709	transcription start site region 33709	1074 bp upstream
Tssr33710	transcription start site region 33710	1036 bp upstream
Tssr33711	transcription start site region 33711	1016 bp upstream
Tssr33712	transcription start site region 33712	978 bp upstream
Tssr33713	transcription start site region 33713	934 bp upstream
Tssr33714	transcription start site region 33714	733 bp upstream
Tssr33715	transcription start site region 33715	645 bp upstream
Tssr33716	transcription start site region 33716	21 bp downstream