rs31235607 SNP Detail

Summary

• ID
  rs31235607
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:79422961 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CGGTACGTGT GTGTAGACTG
  AGACATGGAG ATGGATGATA GACATATCAC TCTCTTTAAA TAATTCAAGT ATCAGTCTCT
  ACATTTAAAT GTACACCAAG AAGCCATAAA CAAATACTGC TCTCTGTTCT GGTTTTTGGA
  TTTCAGTACT ATACAGTCCT AATGTTTGGA GCTCATGAGC AGAAAGATGA CCACTAACAT
  Y
  CAAATTTTTA CCAACTAAAT GCCACTAAGA AAGAAACCTA TCAGCCTGGA CATGCAGGCT
  TGTGTTTTTC ACACTCTTTC TAGCATTCCT GGTGCAGCAG GAAAGAAAAG CAGCAGGACA
  GAGCTGTGAG AGATGAGGGC CGAACCCTGG GACAGGAGCA ACCTTGGACC ATGGAGCATG
  TGATGGGAAC CTGGCCCTCA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	MSM/Ms	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss47031220	NES10776457	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	T	C	C	C	T		C	C	T	C
ss135372404	ENSMUSSNP5524452	ENSEMBL	ENSEMBL_Sanger	f	SNP		C						C				T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	MSM/Ms	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs31235607					SNP	C	C	C	C	C	C	T	C	C	C	T	T	C	C	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss47031220	NES10776457	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:79422961 () rs orientation: forward

Symbol	Name	Function Class
Fnip2	folliculin interacting protein 2	within coordinates
Rr77764	regulatory region 77764	639 bp proximal
Tssr33701	transcription start site region 33701	675 bp downstream