rs31235703 SNP Detail

Summary

• ID
  rs31235703
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr1:157335695 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TGATGGCCCC TGTGGAATTT
  GCAGCTCAGT AGGAAAAACA GATGTTACGT ACGAGGGGAG GAGTGACCGC TGGGCTGGGA
  GAAGAGAGAG CTGGGTCCTG GCGCAGATCC TGATGAGCCA TGTGCCACTC TGGGCTGCAG
  CTCATGGGCT GTGTAGTGAC TGCATGGGGA TGGATGAGCT CCCGCCTGGT GTGAGTTTCC
  Y
  GCTTGCTGAA CAGTTTCTCA CACAGCTCTG GATTTTGTCC ACATGTAAAA GGATGGATAT
  TTTCCTTAGG AGTGTATCTC ACCCATCACC AATTAGGACT CTTCACCTTG TGATATTCTG
  GAAGAGTCTG GGAAGATCCT CCTAGAGAGG ACCCACTCAC AGTATAAATA CTTTAGGAAC
  AAGCCTTGCT TTCAAGAAAA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss49717933	NES13053925	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	C	T	T	T	T	T	T	T	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs31235703					SNP	T	T	T	T	T	T	C	T	T	T	T	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss49717933	NES13053925	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:157335695 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Gm15486	predicted gene 15486			within coordinates
Rr421396	regulatory region 421396			1860 bp distal
Rr421397	regulatory region 421397			1305 bp distal
Rr421398	regulatory region 421398			585 bp distal
Rr421399	regulatory region 421399			within coordinates
Sec16b	SEC16 homolog B, endoplasmic reticulum export factor			Intron
				Noncoding-Transcript-Variant
Tssr9592	transcription start site region 9592			1349 bp downstream
Tssr9593	transcription start site region 9593			1314 bp downstream