rs31236200 SNP Detail

Summary

• ID
  rs31236200
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr7:45291565 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        GATCC TAAACAAACG GACCCTTTGC
  R
  GACTAAGTAC AAAATGCTCT TCCTT                                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	C57BL/6J
ss46010852	mCV25292094	ABI	CRAMUS_MOUSE	f	SNP	G	A	A
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	C57BL/6J
rs31236200					SNP	G	A	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:45291565 () rs orientation: forward

Symbol	Name	Function Class
Cpgi19076	CpG island 19076	897 bp proximal
Cpgi19077	CpG island 19077	1931 bp proximal
Mamstr	MEF2 activating motif and SAP domain containing transcriptional regulator	Intron
Rr400317	regulatory region 400317	1523 bp upstream
Rr646530	regulatory region 646530	1632 bp distal
Tssr66602	transcription start site region 66602	1702 bp downstream
Tssr66603	transcription start site region 66603	354 bp downstream
Tssr66604	transcription start site region 66604	1812 bp upstream