rs31236776 SNP Detail

Summary

• ID
  rs31236776
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr1:157334510 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        GAAAA CTAAGAGGGA ATGTAATTTT
  Y
  ACTGGAGACC CTTCTAACAG ATTCA                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss45089749	mCV23079355	ABI	CRAMUS_MOUSE	f	SNP		T			T		C
ss49717936	NES13053982	PERLEGEN	MM_PANEL2	f	SNP	C	T	C	C		C		C	C	C	C	C	T
ss145822598	ENSMUSSNP4003627	ENSEMBL	ENSEMBL_Sanger	f	SNP		T					C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs31236776					SNP	C	T	C	C	T	C	C	C	C	C	C	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss49717936	NES13053982	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:157334510 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Gm15486	predicted gene 15486			within coordinates
Rr421396	regulatory region 421396			675 bp distal
Rr421397	regulatory region 421397			120 bp distal
Rr421398	regulatory region 421398			within coordinates
Rr421399	regulatory region 421399			988 bp proximal
Sec16b	SEC16 homolog B, endoplasmic reticulum export factor			Intron
				Noncoding-Transcript-Variant
Tssr9592	transcription start site region 9592			164 bp downstream
Tssr9593	transcription start site region 9593			129 bp downstream