rs31236778 SNP Detail

Summary

• ID
  rs31236778
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:157334171 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        AGGAC TTTTGATCAG GCACTCAGAG
  K
  TCTGTGTGGT TACTCTCTAT ACTTT                                      
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	BTBR T<+> Itpr3/J	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	MOLF/EiJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss45021721	mCV23079538	ABI	CRAMUS_MOUSE	f	SNP		G	T		T		G
ss49717938	NES13053980	PERLEGEN	MM_PANEL2	f	SNP	G		T	G		G		G	G	G	G	T
ss145822596	ENSMUSSNP3988053	ENSEMBL	ENSEMBL_Sanger	f	SNP			T				G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	BTBR T<+> Itpr3/J	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	MOLF/EiJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs31236778					SNP	G	G	T	G	T	G	G	G	G	G	G	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss49717938	NES13053980	PERLEGEN	MM_PANEL	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:157334171 () rs orientation: forward

Symbol	Name	Function Class
Gm15486	predicted gene 15486	within coordinates
Rr421396	regulatory region 421396	336 bp distal
Rr421397	regulatory region 421397	within coordinates
Rr421398	regulatory region 421398	220 bp proximal
Rr421399	regulatory region 421399	1327 bp proximal
Sec16b	SEC16 homolog B, endoplasmic reticulum export factor	132 bp upstream
Tssr9592	transcription start site region 9592	156 bp upstream
Tssr9593	transcription start site region 9593	176 bp upstream