rs31236779 SNP Detail

Summary

• ID
  rs31236779
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:157333565 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        AATAGATGCT ATTTCATCTG AGAAAGTAAC TTCTACTTTG
  TCAATGCTCT CTTTCAGACT TTCTCAGAGA AAGGGAATAT TAGCAGCTGC CGCCACACAT
  Y
  TTTTATGACC TTTATCAATG TCGATTCAAT AACTAATATA TAATTTTGTA TAATCATAAA
  AAATTATGTA TATGTATAAG ATGGAAAAAG GAATGATAC                       
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss49717939	NES13054019	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	T	C	C	C	T	C	C	T	C	C	T	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs31236779					SNP	C	C	C	T	C	C	C	T	C	C	T	C	C	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss49717939	NES13054019	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:157333565 () rs orientation: forward

Symbol	Name	Function Class
Gm15486	predicted gene 15486	within coordinates
Rr421396	regulatory region 421396	249 bp proximal
Rr421397	regulatory region 421397	572 bp proximal
Rr421398	regulatory region 421398	826 bp proximal
Rr421399	regulatory region 421399	1933 bp proximal
Sec16b	SEC16 homolog B, endoplasmic reticulum export factor	738 bp upstream
Tssr9592	transcription start site region 9592	762 bp upstream
Tssr9593	transcription start site region 9593	782 bp upstream