rs31236780 SNP Detail

Summary

• ID
  rs31236780
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:157333072 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        CTTAT TCTTTCTGTT GTCTGAACTT
  R
  TCTGTTCTAG AAAAGTCTAA GAACG                                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	BTBR T<+> Itpr3/J	C57BL/6J	DBA/2J	FVB/NJ	PWD/PhJ
ss45164073	mCV23079539	ABI	CRAMUS_MOUSE	f	SNP		A		A	G
ss49717940	NES13054018	PERLEGEN	MM_PANEL2	f	SNP	G	A	G			G	G
ss145822593	ENSMUSSNP738697	ENSEMBL	ENSEMBL_Sanger	f	SNP		A			G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	BTBR T<+> Itpr3/J	C57BL/6J	DBA/2J	FVB/NJ	PWD/PhJ
rs31236780					SNP	G	A	G	A	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss49717940	NES13054018	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:157333072 () rs orientation: forward

Symbol	Name	Function Class
Gm15486	predicted gene 15486	within coordinates
Rr421396	regulatory region 421396	742 bp proximal
Rr421397	regulatory region 421397	1065 bp proximal
Rr421398	regulatory region 421398	1319 bp proximal
Sec16b	SEC16 homolog B, endoplasmic reticulum export factor	1231 bp upstream
Tssr9592	transcription start site region 9592	1255 bp upstream
Tssr9593	transcription start site region 9593	1275 bp upstream