rs31237719 SNP Detail

Summary

• ID
  rs31237719
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:37695264 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        CTGCCGCGGC TCGGTGCCCC TGAGGTCTCG GCGTGGGGCC
  CAAGCGCCCG ACGGTGCTAC CCACACTGCT GTCCGCGGGT GCGCACCGGC TTCGCTCTGG
  R
  CAGTTGCGGG GTGCCTAGGT GCTCCGCCTG AGCGAACTTG CTTGGGAATG CCCTGTAAAA
  TGCAAATTAA AGCCGTGCCT AGGGGTTTCA TAACTCAAA                       
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	C57BL/6J	LG/J	SM/J
ss45511941	mCV25185817	ABI	CRAMUS_MOUSE	f	SNP	G	G	G	A
ss134809984	ENSMUSSNP747923	ENSEMBL	ENSEMBL_Sanger	f	SNP		G	G
ss320711451	CHEV_3_37540037	CHEVERUD	SCREENING_POP	f	SNP					A	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	C57BL/6J	LG/J	SM/J
rs31237719					SNP	G	G	G	A	A	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:37695264 () rs orientation: forward

Symbol	Name	Function Class
Cpgi13100	CpG island 13100	within coordinates
Gm42922	predicted gene 42922	Coding-NonSynonymous
Rr575523	regulatory region 575523	1025 bp distal
Rr575524	regulatory region 575524	within coordinates
Rr575525	regulatory region 575525	318 bp distal
Rr575526	regulatory region 575526	210 bp distal
Spry1	sprouty RTK signaling antagonist 1	Intron
Tssr28908	transcription start site region 28908	1422 bp downstream
Tssr28909	transcription start site region 28909	1203 bp downstream
Tssr28910	transcription start site region 28910	1172 bp downstream
Tssr28911	transcription start site region 28911	1151 bp downstream
Tssr28912	transcription start site region 28912	1129 bp downstream