rs31238166 SNP Detail

Summary

• ID
  rs31238166
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:80710706 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        ATGCC AAGACCCGGG TAACTCGATC
  R
  AACCTTTGAA AGACTTCGTG TAGGA                                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
ss45511646	mCV25265211	ABI	CRAMUS_MOUSE	f	SNP	G	A	G
ss135384877	ENSMUSSNP2850655	ENSEMBL	ENSEMBL_Sanger	f	SNP	G		G
ss320812640	CHEV_3_80607321	CHEVERUD	SCREENING_POP	f	SNP				G	A
SNP Consensus Information
SNP					Consensus Type	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
rs31238166					SNP	G	A	G	G	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:80710706 () rs orientation: forward

Symbol	Name	Function Class
Cpgi13280	CpG island 13280	1929 bp distal
Cpgi13281	CpG island 13281	231 bp distal
Gm66511	predicted gene, 66511	within coordinates
Gria2	glutamate receptor, ionotropic, AMPA2 (alpha 2)	Noncoding-Transcript-Variant
Rr578666	regulatory region 578666	74 bp distal
Tssr33765	transcription start site region 33765	798 bp upstream
Tssr33766	transcription start site region 33766	782 bp upstream
Tssr33767	transcription start site region 33767	755 bp upstream
Tssr33768	transcription start site region 33768	727 bp upstream
Tssr33769	transcription start site region 33769	669 bp upstream
Tssr33770	transcription start site region 33770	629 bp upstream
Tssr33771	transcription start site region 33771	559 bp upstream