rs31238556 SNP Detail

Summary

• ID
  rs31238556
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:101198151 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        CGTCG TTCTTCCTGG CCAGTTGAGC
  K
  CGCGCAACAC TTCTGCTCAC AGCCA                                      
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J
ss45511862	mCV22287084	ABI	CRAMUS_MOUSE	f	SNP	G	T	G	G
ss135546268	ENSMUSSNP5789711	ENSEMBL	ENSEMBL_Sanger	f	SNP	G	T		G
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J
rs31238556					SNP	G	T	G	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:101198151 () rs orientation: forward

Symbol	Name	Function Class
Gm32803	predicted gene, 32803	within coordinates
Rr581993	regulatory region 581993	1038 bp distal
Rr581994	regulatory region 581994	509 bp distal
Rr581995	regulatory region 581995	within coordinates
Rr581996	regulatory region 581996	273 bp proximal
Rr581997	regulatory region 581997	1710 bp proximal
Tssr34785	transcription start site region 34785	81 bp upstream