rs31238804 SNP Detail

Summary

• ID
  rs31238804
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr18:17150853 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ATGCCCCAGT ACAGCGGAAT
  GCCAGGGCCA AGAAGCAGGA GGGGGTGGGT TGGGGAGTAG GGTGGGGAGA GGGTATAGGG
  GACTTTCGGG ATAGTATTTG AAATGTAAAT GAAGAAAATA TCTAATAAAA CAATTAAAAA
  AAAAGAAATT CATTTAAGGT CCTTGCTGAC AATCCTGAGG TATTGGGCCT GGCATAGAGT
  K
  CACACTATTT CATATTTATA GAATTTTTAA AAGAAAACAG AAGGCATAAG TTCTTCTACT
  GGTTTTCTCT CTATCCCTCA GACTTACTGA TATCTTAAAA TATAGCCGAT CAGCTACTTC
  TTCACATTCT GCTGAGATAG GAGAAAAATT GTGAAATTCT TAAGCCAGAA ACTAAGTTTT
  CAAAATAATT GAGTGCATTT                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss49218209	NES12662410	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	T	T	T	T	T	G	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs31238804					SNP	T	T	T	T	T	T	T	T	T	T	T	G	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss49218209	NES12662410	PERLEGEN	MM_PANEL	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr18:17150853 () rs orientation: forward

Symbol	Name	Function Class
Gm58605	predicted gene, 58605	within coordinates
Rr344746	regulatory region 344746	1948 bp proximal
Tssr150151	transcription start site region 150151	1266 bp upstream
Tssr152558	transcription start site region 152558	1179 bp downstream