rs31238815 SNP Detail

Summary

• ID
  rs31238815
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:146164945 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTTTTTTTTT TTGCTTTTTC
  CAGACAGGGT TTCTCTGTGT AGCCCTTAGC CCTGGCTGTC CTGGAACTCA CTCTGTAGAT
  CAGGCTGGCC TCAAACTCAG AAATCCGCCT GCCTCTGCCT CCCAAGTGCT AGAATTAAAG
  GTGTTGACCA CGCCGGTTCT TTTTAACTCT TTACTATCAT GGCAGTTTCT GAATGCCATG
  M
  ATTTTATTTT ATTATTAATT TCATGATTAT TCTGTATAAT CAGGTTATTT ATAGCATATC
  TTTTAAAAAA ATATATTTAT TTTATGTATA TTAGTCCACT GTAGCTGTCT TCTGACACAC
  CAGAAGAGGG CATCAGATCC CATTACAGAT GGTTGTGAGC CACCATGTGG TTGCTGGGAG
  TGAAATCAGG ACCTCTGGAA                                            
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	C57BL/6J	DBA/2J	LG/J	MSM/Ms	SM/J
ss45513312	mCV24074691	ABI	CRAMUS_MOUSE	f	SNP	C	A	A
ss136044657	ENSMUSSNP1984543	ENSEMBL	ENSEMBL_Sanger	f	SNP	C		A		C
ss321010477	CHEV_3_146122154	CHEVERUD	SCREENING_POP	f	SNP				C		C
SNP Consensus Information
SNP					Consensus Type	A/J	C57BL/6J	DBA/2J	LG/J	MSM/Ms	SM/J
rs31238815					SNP	C	A	A	C	C	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:146164945 () rs orientation: forward

Symbol	Name	Function Class
Ctbs	chitobiase	Intron
Rr587031	regulatory region 587031	116 bp proximal
Spata1	spermatogenesis associated 1	Intron