rs31238945 SNP Detail

Summary

• ID
  rs31238945
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr1:58625643 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        GCCTAAAGAT TCCGTCCTGG AGCAAGACAA ACACGGCTTT
  ATCGTCCTTC TCCTCAATAT CTTCTACCTC AAGCAGACTC CAGCTGCAAA GTGTGGGAAA
  Y
  AATCTCTACT TCCAGGCTCC TTCATGTCAT CTCTACGTTG TCTGGGAGCC TTGCGCCAGT
  ACCGGAACGT TTACCATCTC CCCCATTTTC CTGTCGTAA                       
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	BTBR T<+> Itpr3/J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	PWD/PhJ	WSB/EiJ
ss45011480	mCV23020497	ABI	CRAMUS_MOUSE	f	SNP			T			C
ss49402925	NES12923754	PERLEGEN	MM_PANEL2	f	SNP	T		T	T	C		T	T	C	C	T
ss149138765	ENSMUSSNP2846372	ENSEMBL	ENSEMBL_Sanger	f	SNP		T	T			C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	BTBR T<+> Itpr3/J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	PWD/PhJ	WSB/EiJ
rs31238945					SNP	T	T	T	T	C	C	T	T	C	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss49402925	NES12923754	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:58625643 () rs orientation: forward

Symbol	Name	Function Class
Cpgi281	CpG island 281	within coordinates
Hycc2	hyccin PI4KA lipid kinase complex subunit 2	161 bp upstream
Ndufb3	NADH:ubiquinone oxidoreductase subunit B3	mRNA-UTR
Rr411457	regulatory region 411457	304 bp distal
Rr411458	regulatory region 411458	90 bp distal
Rr411459	regulatory region 411459	265 bp distal
Rr411460	regulatory region 411460	within coordinates
Tssr93	transcription start site region 93	144 bp upstream
Tssr6781	transcription start site region 6781	83 bp downstream
Tssr6782	transcription start site region 6782	38 bp downstream
Tssr6783	transcription start site region 6783	107 bp upstream
Tssr11786	transcription start site region 11786	166 bp upstream