rs31239653 SNP Detail

Summary

• ID
  rs31239653
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr19:38106567 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        GAAAA GAACCTTTGG GCCCTTCTCC
  R
  TATGGCTGAT GGCAAAGCCC TAGGA                                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
ss45010545	mCV27587514	ABI	CRAMUS_MOUSE	f	SNP	A	G	A	G	A
ss146361593	ENSMUSSNP4034747	ENSEMBL	ENSEMBL_Sanger	f	SNP			A		A
ss325801291	CHEV_19_38192609	CHEVERUD	SCREENING_POP	f	SNP						A	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
rs31239653					SNP	A	G	A	G	A	A	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr19:38106567 () rs orientation: forward

Symbol	Name	Function Class
Cpgi10802	CpG island 10802	1105 bp proximal
Rbp4	retinol binding protein 4, plasma	Intron
Rr547239	regulatory region 547239	1794 bp proximal
Tssr156244	transcription start site region 156244	1357 bp downstream
Tssr156245	transcription start site region 156245	196 bp upstream
Tssr159111	transcription start site region 159111	1318 bp upstream
Tssr159112	transcription start site region 159112	1268 bp upstream
Tssr159113	transcription start site region 159113	1203 bp upstream
Tssr159114	transcription start site region 159114	188 bp downstream
Tssr159115	transcription start site region 159115	227 bp downstream
Tssr159116	transcription start site region 159116	263 bp downstream
Tssr159117	transcription start site region 159117	361 bp downstream