rs31239824 SNP Detail

Summary

• ID
  rs31239824
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:79437298 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GTGTTCTGGA GGCAACCCAA
  ATTGCCCCTG GAAGAAACGA ACTAGGCCAC TGAACCACTG AGTTCCCCTG ATCACTGAGT
  CAGACATGAA GACAGAAGAT AGCACACTTG TGCTGTGGAT GACACAGCCA ACACGTGTCA
  ATCAGACTAA AGCAGCTCAC CACTGATGTG AGCAGAGTCC GGCTGGTGGA GAGAGGGAAG
  R
  CATGTTCAAC TGGCTGCTGA CTGCTATGCT CCTCTGGATG GTACCAACAA AGCTGGTATC
  AACTGAGTGC AGCTAGAACA TTCTGAATAC ACGTATGTTT CGACCATAAA GGCATTTTTA
  CTGCACAAAA CTCAAATACA GAAAATGTAT CTTTAATCCT TTCAAGCACT AGGAACAAAA
  AATTTTAAAA AGTTAAAGGG                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss47031396	NES10775871	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	A	G	A	A	A	A	A	A	A	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs31239824					SNP	A	A	A	A	A	A	G	A	A	A	A	A	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss47031396	NES10775871	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:79437298 () rs orientation: forward

Symbol	Name	Function Class
Fnip2	folliculin interacting protein 2	within coordinates
Rr2009	regulatory region 2009	1063 bp proximal
Rr375221	regulatory region 375221	1305 bp upstream
Rr578535	regulatory region 578535	1668 bp distal
Rr578536	regulatory region 578536	1347 bp distal
Rr578537	regulatory region 578537	within coordinates
Rr578538	regulatory region 578538	1557 bp proximal
Tssr29582	transcription start site region 29582	21 bp downstream
Tssr33705	transcription start site region 33705	1668 bp downstream
Tssr33706	transcription start site region 33706	1686 bp downstream
Tssr33707	transcription start site region 33707	1704 bp downstream
Tssr33708	transcription start site region 33708	1726 bp downstream
Tssr33709	transcription start site region 33709	1746 bp downstream
Tssr33710	transcription start site region 33710	1767 bp downstream
Tssr33711	transcription start site region 33711	1802 bp downstream
Tssr33712	transcription start site region 33712	1840 bp downstream
Tssr33713	transcription start site region 33713	1883 bp downstream