rs31239825 SNP Detail

Summary

• ID
  rs31239825
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:79437448 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AGCAGCTCAC CACTGATGTG
  AGCAGAGTCC GGCTGGTGGA GAGAGGGAAG ACATGTTCAA CTGGCTGCTG ACTGCTATGC
  TCCTCTGGAT GGTACCAACA AAGCTGGTAT CAACTGAGTG CAGCTAGAAC ATTCTGAATA
  CACGTATGTT TCGACCATAA AGGCATTTTT ACTGCACAAA ACTCAAATAC AGAAAATGTA
  Y
  CTTTAATCCT TTCAAGCACT AGGAACAAAA AATTTTAAAA AGTTAAAGGG GGGAAAAAAA
  ACCAGGTTGC AAAGCATTCT GATATTTAAA GTATGTGAAA ATTATTAAAG TCATAACAAA
  AGAAGTTTAT TAAAAGTTTG AAAACCACTC ACTCACACAA AGTTTTTTGG GTTTTGTTTT
  TGTTTTTTAC AAATTTTAAA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss47031400	NES10775877	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	T	T	T	T	C	T	T	C	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs31239825					SNP	T	T	T	T	T	T	T	T	T	T	C	T	T	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss47031400	NES10775877	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:79437448 () rs orientation: forward

Symbol	Name	Function Class
Fnip2	folliculin interacting protein 2	within coordinates
Rr2009	regulatory region 2009	913 bp proximal
Rr375221	regulatory region 375221	1155 bp upstream
Rr578535	regulatory region 578535	1818 bp distal
Rr578536	regulatory region 578536	1497 bp distal
Rr578537	regulatory region 578537	103 bp distal
Rr578538	regulatory region 578538	1407 bp proximal
Tssr29582	transcription start site region 29582	171 bp downstream
Tssr29583	transcription start site region 29583	1869 bp upstream
Tssr33705	transcription start site region 33705	1518 bp downstream
Tssr33706	transcription start site region 33706	1536 bp downstream
Tssr33707	transcription start site region 33707	1554 bp downstream
Tssr33708	transcription start site region 33708	1576 bp downstream
Tssr33709	transcription start site region 33709	1596 bp downstream
Tssr33710	transcription start site region 33710	1617 bp downstream
Tssr33711	transcription start site region 33711	1652 bp downstream
Tssr33712	transcription start site region 33712	1690 bp downstream
Tssr33713	transcription start site region 33713	1733 bp downstream
Tssr33714	transcription start site region 33714	1919 bp downstream