rs31239828 SNP Detail

Summary

• ID
  rs31239828
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:79437602 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CCATAAAGGC ATTTTTACTG
  CACAAAACTC AAATACAGAA AATGTATCTT TAATCCTTTC AAGCACTAGG AACAAAAAAT
  TTTAAAAAGT TAAAGGGGGG AAAAAAAACC AGGTTGCAAA GCATTCTGAT ATTTAAAGTA
  TGTGAAAATT ATTAAAGTCA TAACAAAAGA AGTTTATTAA AAGTTTGAAA ACCACTCACT
  S
  ACACAAAGTT TTTTGGGTTT TGTTTTTGTT TTTTACAAAT TTTAAAGAAA TTGCCATGAT
  CCAGGCTATT ATCCTTTGTG GATGGCCACC CCAAATAACA TCTTGGGGAT TTGGAAATCT
  AGAAGAATAA AAAAACAGAA GGGAAAATGT CCTAATGATG CAGTTTTGAA CTCCCAGAGA
  AGACTCTTTA AAACAACCTG                                            
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss45561733	mCV24189759	ABI	CRAMUS_MOUSE	f	SNP	G	G	C					C
ss47031404	NES10775880	PERLEGEN	MM_PANEL2	f	SNP	G		C	C	C	C	C		C	C	C	C	C	C	C	C	C
ss135372476	ENSMUSSNP6330195	ENSEMBL	ENSEMBL_Sanger	f	SNP		G	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs31239828					SNP	G	G	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss47031404	NES10775880	PERLEGEN	MM_PANEL	f	SNP	C/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:79437602 () rs orientation: forward

Symbol	Name	Function Class
Fnip2	folliculin interacting protein 2	Intron
Rr2009	regulatory region 2009	759 bp proximal
Rr375221	regulatory region 375221	1001 bp upstream
Rr578535	regulatory region 578535	1972 bp distal
Rr578536	regulatory region 578536	1651 bp distal
Rr578537	regulatory region 578537	257 bp distal
Rr578538	regulatory region 578538	1253 bp proximal
Tssr29582	transcription start site region 29582	325 bp downstream
Tssr29583	transcription start site region 29583	1715 bp upstream
Tssr33705	transcription start site region 33705	1364 bp downstream
Tssr33706	transcription start site region 33706	1382 bp downstream
Tssr33707	transcription start site region 33707	1400 bp downstream
Tssr33708	transcription start site region 33708	1422 bp downstream
Tssr33709	transcription start site region 33709	1442 bp downstream
Tssr33710	transcription start site region 33710	1463 bp downstream
Tssr33711	transcription start site region 33711	1498 bp downstream
Tssr33712	transcription start site region 33712	1536 bp downstream
Tssr33713	transcription start site region 33713	1579 bp downstream
Tssr33714	transcription start site region 33714	1765 bp downstream
Tssr33715	transcription start site region 33715	1869 bp downstream