rs31240638 SNP Detail

Summary

• ID
  rs31240638
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:86826531 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        AACTCTAAAC GCCCAAGTCA TACCCTAAAC CAAGCACATC
  AGAATATCTA AGGGGTGGGG CCGGGTCCGA TATTTTAAAA AGTGCCCAGC ACGGTCCAAA
  R
  TGAAGACAGG CTGAGTGAGA CTTTTTCTGT GCTGGCTTGC CTCTCTTGAT CTCCAGTGCC
  TTGTGCCACA CATGAAACCA GAAAAGCCAA CCTAGAACG                       
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
ss45514101	mCV24905871	ABI	CRAMUS_MOUSE	f	SNP	A	A	G	A
ss135451252	ENSMUSSNP3987072	ENSEMBL	ENSEMBL_Sanger	f	SNP	A	A		A
ss320830113	CHEV_3_86723146	CHEVERUD	SCREENING_POP	f	SNP					A	A
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
rs31240638					SNP	A	A	G	A	A	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:86826531 () rs orientation: forward

Symbol	Name	Function Class
Cpgi13328	CpG island 13328	299 bp proximal
Dclk2	doublecortin-like kinase 2	within coordinates
Rr77821	regulatory region 77821	within coordinates
Rr375296	regulatory region 375296	1899 bp downstream
Tssr33913	transcription start site region 33913	1109 bp downstream
Tssr33914	transcription start site region 33914	1139 bp downstream
Tssr33915	transcription start site region 33915	1171 bp downstream
Tssr33916	transcription start site region 33916	1264 bp downstream
Tssr33917	transcription start site region 33917	1319 bp downstream
Tssr33918	transcription start site region 33918	1606 bp downstream