rs31240820 SNP Detail

Summary

• ID
  rs31240820
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr7:30813747 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        TCCATGATCC CAAACACCTC ATGGAGGGAA TATTAGTATC
  CATCCATACT TGACTGCAAG GAAAGGTGGA CTGAAGCCCA GAGACGTGAA GTTACCTACC
  Y
  AGGATCACAC AGTAAAAGAC AGCAGAAACA ACCTGACTAG CTCTACACCC TTAACAGAGA
  TGGCAACAGC AGCAGCCCCC ACCTCAGCCC CCAGAAGAT                       
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
ss46011523	mCV24563033	ABI	CRAMUS_MOUSE	f	SNP	C	C	T
ss322139431	CHEV_7_31899341	CHEVERUD	SCREENING_POP	f	SNP				C	T
SNP Consensus Information
SNP					Consensus Type	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
rs31240820					SNP	C	C	T	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:30813747 () rs orientation: forward

Symbol	Name	Function Class
Cpgi18835	CpG island 18835	1613 bp proximal
Hpn	hepsin	within coordinates
Tssr71932	transcription start site region 71932	378 bp downstream
Tssr71933	transcription start site region 71933	905 bp downstream