rs31241045 SNP Detail

Summary

• ID
  rs31241045
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr7:99772242 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        TATTT AAATATTCTC GTGTAATCTC
  R
  TCAACAATCT AGGATGTAAA TATTA                                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss46011616	mCV23563842	ABI	CRAMUS_MOUSE	f	SNP	G	G	G					G		A
ss47078481	NES11627285	PERLEGEN	MM_PANEL2	f	SNP	G		G	G	G	G	A		G	A	G	G	G	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs31241045					SNP	G	G	G	G	G	G	A	G	G	A	G	G	G	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss47078481	NES11627285	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:99772242 () rs orientation: forward

Symbol	Name	Function Class
Cpgi19477	CpG island 19477	1193 bp distal
Pold3	polymerase (DNA-directed), delta 3, accessory subunit	1533 bp upstream
Rr400466	regulatory region 400466	1304 bp downstream
Rr652064	regulatory region 652064	1580 bp distal
Rr652065	regulatory region 652065	980 bp distal
Rr652066	regulatory region 652066	509 bp proximal
Rr652067	regulatory region 652067	631 bp proximal
Rr652068	regulatory region 652068	1228 bp proximal
Rr652069	regulatory region 652069	1361 bp proximal
Tssr73731	transcription start site region 73731	1941 bp upstream
Tssr73732	transcription start site region 73732	1593 bp upstream
Tssr73733	transcription start site region 73733	1524 bp upstream
Tssr73734	transcription start site region 73734	1511 bp upstream