rs31241210 SNP Detail

Summary

• ID
  rs31241210
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:79438598 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TGTCATACAC ATCCTTTTCA
  CAAAAGGCAT TTTCCAGAGT CGAACCAGGT TCTCCCTCAG CAGCTGGCTT CAGCACTCCC
  ACAAAGCAGG TCTCCAGTCC TTGCCTGTCC TCTGGTCCTC TGTGTGCTAA GTTAAAGCTC
  AGAGCTTTAC CTTTTGCCTT ATAAAGCTCA GCGTTCCAAA AGAGGACACA ATCGATTCCA
  Y
  ACAAGTTGGC CCCAGCAGAG GTAATGAACA CTTAAGAAGT TAAGATAGTG ACAGACTCCT
  AAGAGCCACT ACAGATACCT GTGCCTACCT ACATCTTTTC TACAGAGGAA AGGACTTGTT
  TCTACAAGTC ACCAATAACT ACATTTCTCC TACGTAAAGC ATTCTTGAAA ACATAATTCA
  AATCAATAAA GCTTCTTAGA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss47031418	NES10775810	PERLEGEN	MM_PANEL2	f	SNP	T	C	C	C	C	C	C	C	C	C	C	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs31241210					SNP	T	C	C	C	C	C	C	C	C	C	C	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss47031418	NES10775810	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:79438598 () rs orientation: forward

Symbol	Name	Function Class
Fnip2	folliculin interacting protein 2	Intron
Rr2009	regulatory region 2009	within coordinates
Rr375221	regulatory region 375221	5 bp upstream
Rr578537	regulatory region 578537	1253 bp distal
Rr578538	regulatory region 578538	257 bp proximal
Tssr29582	transcription start site region 29582	1321 bp downstream
Tssr29583	transcription start site region 29583	719 bp upstream
Tssr33705	transcription start site region 33705	368 bp downstream
Tssr33706	transcription start site region 33706	386 bp downstream
Tssr33707	transcription start site region 33707	404 bp downstream
Tssr33708	transcription start site region 33708	426 bp downstream
Tssr33709	transcription start site region 33709	446 bp downstream
Tssr33710	transcription start site region 33710	467 bp downstream
Tssr33711	transcription start site region 33711	502 bp downstream
Tssr33712	transcription start site region 33712	540 bp downstream
Tssr33713	transcription start site region 33713	583 bp downstream
Tssr33714	transcription start site region 33714	769 bp downstream
Tssr33715	transcription start site region 33715	873 bp downstream
Tssr33716	transcription start site region 33716	1550 bp downstream