rs31241212 SNP Detail

Summary

• ID
  rs31241212
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:79438856 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CCTAAGAGCC ACTACAGATA
  CCTGTGCCTA CCTACATCTT TTCTACAGAG GAAAGGACTT GTTTCTACAA GTCACCAATA
  ACTACATTTC TCCTACGTAA AGCATTCTTG AAAACATAAT TCAAATCAAT AAAGCTTCTT
  AGAGTCCCGT GTGGTTAGTA TTTTCCAGAC TGAAACAGAA CTAAACATTC ATACCTGTGG
  Y
  TGAGCACTGT GGAATTTGTG TCGCGTCCTC CTCTGGCACA TTTTGGAATC TTTGCACATA
  CAAGTGTCTT GAAAATCCTC CCAGCACCAC AAGTGGTATC GGTCAGACAT CTGGCTGACT
  CCTGTTGGCC TACTGGCCAG TTTGTGCTGT CTGCTGTACC ACCACACATC TCCTGAGGGC
  ATAGATGCTC TTCAGTTGAT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss47031420	NES10775812	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs31241212					SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss47031420	NES10775812	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:79438856 () rs orientation: forward

Symbol	Name	Function Class
Fnip2	folliculin interacting protein 2	within coordinates
Rr2009	regulatory region 2009	within coordinates
Rr375221	regulatory region 375221	within coordinates
Rr578537	regulatory region 578537	1511 bp distal
Rr578538	regulatory region 578538	within coordinates
Tssr29582	transcription start site region 29582	1579 bp downstream
Tssr29583	transcription start site region 29583	461 bp upstream
Tssr33705	transcription start site region 33705	110 bp downstream
Tssr33706	transcription start site region 33706	128 bp downstream
Tssr33707	transcription start site region 33707	146 bp downstream
Tssr33708	transcription start site region 33708	168 bp downstream
Tssr33709	transcription start site region 33709	188 bp downstream
Tssr33710	transcription start site region 33710	209 bp downstream
Tssr33711	transcription start site region 33711	244 bp downstream
Tssr33712	transcription start site region 33712	282 bp downstream
Tssr33713	transcription start site region 33713	325 bp downstream
Tssr33714	transcription start site region 33714	511 bp downstream
Tssr33715	transcription start site region 33715	615 bp downstream
Tssr33716	transcription start site region 33716	1292 bp downstream