rs31241818 SNP Detail

Summary

• ID
  rs31241818
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:34524390 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GTTTCTAGAG GGTGAGATCT
  TTCAAAATCT ATGTTTTTAG ATTTCCAGCT CATTATTGTT ACCCAGTCAT GCTATTGTGC
  TCACGAAAAT TTCTACCTAA CTGGACTTAG TTTGTAAAAT GGATTAGAAA TACGTGAGAA
  CCAATTAGCA GAGTGCTCTC AGTCTGGGAG GAGGGTTTAT ACCGGGTTGC TAAGGGGCTT
  Y
  CTCCTTGTCT AACAGTCGAA TGAAGACATT CTCAGCCTCC TAAACTTATT AGTAAACGCT
  GCAACAGGCT ATGAGTGCTC TGATCAACCC AGACCTCAAC CCATTTGAAA CATCTGCAGG
  GTCTGCGGGA AAGCTCCTGA CCCACAGCTA GCTCCAAAGG AGAAAGCATA CTTGATCTGC
  CTCGAAGGTT CTGACCTGAT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	MOLF/EiJ	NZW/LacJ	WSB/EiJ
ss45010966	mCV23084344	ABI	CRAMUS_MOUSE	f	SNP		T	C					C		C
ss51237333	NES14284666	PERLEGEN	MM_PANEL2	f	SNP	T		C	C	C	T	C		C	C	C	C	C	T
ss148889145	ENSMUSSNP6018641	ENSEMBL	ENSEMBL_Sanger	f	SNP		T	C							C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	MOLF/EiJ	NZW/LacJ	WSB/EiJ
rs31241818					SNP	T	T	C	C	C	T	C	C	C	C	C	C	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51237333	NES14284666	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:34524390 () rs orientation: forward

Symbol	Name	Function Class
4930568A12Rik	RIKEN cDNA 4930568A12 gene	within coordinates
Cpgi120	CpG island 120	263 bp proximal
Gm32566	predicted gene, 32566	within coordinates
Rr409037	regulatory region 409037	860 bp distal
Rr409038	regulatory region 409038	410 bp distal
Rr409039	regulatory region 409039	within coordinates
Rr409040	regulatory region 409040	614 bp proximal
Rr409041	regulatory region 409041	893 bp proximal
Tssr36	transcription start site region 36	3 bp upstream
Tssr11221	transcription start site region 11221	615 bp downstream
Tssr11222	transcription start site region 11222	639 bp downstream