rs31242024 SNP Detail

Summary

• ID
  rs31242024
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:79438953 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TAAAGCATTC TTGAAAACAT
  AATTCAAATC AATAAAGCTT CTTAGAGTCC CGTGTGGTTA GTATTTTCCA GACTGAAACA
  GAACTAAACA TTCATACCTG TGGTTGAGCA CTGTGGAATT TGTGTCGCGT CCTCCTCTGG
  CACATTTTGG AATCTTTGCA CATACAAGTG TCTTGAAAAT CCTCCCAGCA CCACAAGTGG
  Y
  ATCGGTCAGA CATCTGGCTG ACTCCTGTTG GCCTACTGGC CAGTTTGTGC TGTCTGCTGT
  ACCACCACAC ATCTCCTGAG GGCATAGATG CTCTTCAGTT GATCCTGACC AGCAGTGTGG
  ACTAGCCCAC TCTGTAAAGT TCCTTCATTA TCTGAAGGAT ATGCCACGGT GACGAGCAGC
  AGCTCCAGAC TAAAGACCAT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss47031422	NES10775814	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	C	T	T	T	T	T	T	T	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs31242024					SNP	T	T	T	T	T	T	C	T	T	T	T	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss47031422	NES10775814	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:79438953 () rs orientation: forward

Symbol	Name	Function Class
Fnip2	folliculin interacting protein 2	within coordinates
Rr2009	regulatory region 2009	within coordinates
Rr375221	regulatory region 375221	within coordinates
Rr578537	regulatory region 578537	1608 bp distal
Rr578538	regulatory region 578538	within coordinates
Tssr29582	transcription start site region 29582	1676 bp downstream
Tssr29583	transcription start site region 29583	364 bp upstream
Tssr33705	transcription start site region 33705	13 bp downstream
Tssr33706	transcription start site region 33706	31 bp downstream
Tssr33707	transcription start site region 33707	49 bp downstream
Tssr33708	transcription start site region 33708	71 bp downstream
Tssr33709	transcription start site region 33709	91 bp downstream
Tssr33710	transcription start site region 33710	112 bp downstream
Tssr33711	transcription start site region 33711	147 bp downstream
Tssr33712	transcription start site region 33712	185 bp downstream
Tssr33713	transcription start site region 33713	228 bp downstream
Tssr33714	transcription start site region 33714	414 bp downstream
Tssr33715	transcription start site region 33715	518 bp downstream
Tssr33716	transcription start site region 33716	1195 bp downstream