rs31242286 SNP Detail

Summary

• ID
  rs31242286
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  125
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:9895211 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                                                   
  ACATCCATAT GGAAATTATT TTCACAGGGT TAGCTCTAGT TATAGCCATG TTCCAGGGAG
  ACATTTGATC AGAAAATCCA GAACAGGGAA CAGCTGGAAT CTAGCTACTG AGGCAAAGTG
  TGTATGTATT GTTTGAAAAG GAAGGATGAA ATATCAGTAG AGAGAACTCG GTTGGTGGCA
  GGAGTTCTTT TTGGCATACT GCAGTTGTGG CGTTGTGCCT CCAAAGGCTC TCAGAAGCTC
  ACTACTGGAA ACTCACTGTT GAGCAGCTTT GGAGAGACAG ATACATGGCA CGCACATACA
  Y
  ACATACACAC ACACACATAC ACACACACAC ACACACACAC AGAGAGGGGG GGGGTTAGGA
  GGGGAGAGAG ATCCAGAGCA TCAGCCAGGT AGCAGTGAGC ATCCATCTTA GAGTACTTTT
  AGTGGTAAGG ATATCAGCTA GGAGGGTTTC AGTAAACATT CACTCACCTG GGGTGAGTCA
  GCTGCCTAGG AGCTTTCTAT AGCAATTGAT TTCAGTATCT AAAAGATAAA GACCAGAATA
  CCTAAGAAAG CCCAAAGTAC CATGGCCACT CAATCACCCC ACACCCTAGA ACTCAGAAGA
                                                                   
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	C57BL/6J	DBA/2J
ss45513151	mCV23605620	ABI	CRAMUS_MOUSE	f	SNP	T	T	C	T	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	C57BL/6J	DBA/2J
rs31242286					SNP	T	T	C	T	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:9895211 () rs orientation: forward

Symbol	Name	Function Class
Gm55352	predicted gene, 55352	423 bp upstream
Pag1	phosphoprotein associated with glycosphingolipid microdomains 1	within coordinates
Rr78180	regulatory region 78180	389 bp proximal