rs31242500 SNP Detail

Summary

• ID
  rs31242500
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr19:46308021 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        CAATG TTCTAAGGGA GGAAAACAGA
  R
  GTCTGTGAGG CTAACTTCCC AAAGC                                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	C57BL/6J	DBA/2J
ss45011629	mCV25010757	ABI	CRAMUS_MOUSE	f	SNP	G	A	G	A
ss146451685	ENSMUSSNP5659469	ENSEMBL	ENSEMBL_Sanger	f	SNP		A		A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	C57BL/6J	DBA/2J
rs31242500					SNP	G	A	G	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr19:46308021 () rs orientation: forward

Symbol	Name	Function Class
Cpgi10993	CpG island 10993	995 bp distal
Psd	pleckstrin and Sec7 domain containing	within coordinates
Rr548704	regulatory region 548704	1001 bp distal
Tssr159621	transcription start site region 159621	1622 bp upstream
Tssr159622	transcription start site region 159622	1617 bp upstream
Tssr159623	transcription start site region 159623	1520 bp upstream
Tssr159624	transcription start site region 159624	1505 bp upstream
Tssr159625	transcription start site region 159625	1435 bp upstream