rs31243439 SNP Detail

Summary

• ID
  rs31243439
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:18512568 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TCACAGGATC TTTGCCATCC
  AAGCAGTGTT AGGTATGGCT TGCATCTCGT AGAGTGGGCC TTAAATCAAT TCAGATCTTT
  TTATGTTACA CCTACAAGTT TTGTGCCACT ATTTCACCAG CATAATTACA GGTATGATAC
  CATTATAGAT CTAAGGGTTT GTAGCTGGGT TGGTGTTTAT CTTTTTTCTT TGGTATCATG
  M
  CAAATAACTT CCAGTACTAT GAATGTTAGG CGGTAAGGAT GAAGGCTCTG GTGGACAGCA
  GTTTGACTTC TCCTTGATCA AAAGAGATCT CCTTGTGTAA GTATTGTCTT CAGTAATAGA
  AGTCTCACTG TCAATTTGTA GGGAACAACT AATAGCCTTG CCAATAGCCA GGGTTGTTTG
  GTGCTTCCTC TTTGGCCAAC                                            
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	C57BL/6J	LG/J	MSM/Ms	SM/J
ss45514991	mCV25065176	ABI	CRAMUS_MOUSE	f	SNP	C	A
ss134658339	ENSMUSSNP2422143	ENSEMBL	ENSEMBL_Sanger	f	SNP	C			C
ss320675292	CHEV_3_18358404	CHEVERUD	SCREENING_POP	f	SNP			A		C
SNP Consensus Information
SNP					Consensus Type	A/J	C57BL/6J	LG/J	MSM/Ms	SM/J
rs31243439					SNP	C	A	A	C	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:18512568 () rs orientation: forward

Symbol	Name	Function Class
Gm30667	predicted gene, 30667	within coordinates
Gm65525	predicted gene, 65525	within coordinates
Rr374605	regulatory region 374605	1495 bp downstream
Rr573904	regulatory region 573904	1664 bp distal
Rr573905	regulatory region 573905	1943 bp proximal